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Genome Sequencing & ESTs
Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Assessing the Assembly Quality of Large Plant Genomes
Paul C. Bailey, The Genome Analysis Centre;
B J. Clavijo, The Genome Analysis Centre;
Jonathan Wright, The Genome Analysis Centre;
Sarah Ayling, The Genome Analysis Centre;
Mario Caccamo, The Genome Analysis Centre;
Jane Rogers, The Genome Analysis Centre
Construction of the BAC Physical Map on Wheat Chromosome 6B for its Sequencing
Fuminori Kobayashi, National Institute of Agrobiological Sciences;
Satoshi Katagiri, National Institute of Agrobiological Sciences;
Wataru Karasawa, National Institute of Agrobiological Sciences;
Yumiko Hanawa, National Institute of Agrobiological Sciences;
Hiroyuki Kanamori, National Institute of Agrobiological Sciences;
Yukiyo Ito, National Institute of Agrobiological Sciences;
Hiroko Fujisawa, National Institute of Agrobiological Sciences;
Yoshiyuki Mukai, National Institute of Agrobiological Sciences;
Tsuyoshi Tanaka, National Institute of Agrobiological Sciences;
Satoko Kaneko, Kyoto University;
Shuhei Nasuda, Graduate School of Agriculture, Kyoto University;
Shota Watanabe, Kyoto University;
Toyotaka Sakaguchi, Kyoto University;
Katsuyuki Hayakawa, Nisshin Flour Milling Inc.;
Chikako Abe, Nisshin Flour Milling Inc.;
Ryoko Ohno, Kobe University;
Julio. C. M. Iehisa, Kobe University;
Shigeo Takumi, Kobe University;
Jaroslav Doležel, Institute of Experimental Botany;
Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University;
Takashi Matsumoto, National Institute of Agrobiological Sciences;
Yuichi Katayose, National Institute of Agrobiological Sciences;
Jianzhong Wu, National Institute of Agrobiological Sciences;
Hirokazu Handa, National Institute of Agrobiological Sciences
Construction of Comprehensive Reference Transcripts from Three Homoeologous Genomes in Common Wheat
Kohei Mishina, Kihara Inst. Biol. Res., Yokohama City University;
Yoko Kamiya, Kihara Inst. Biol. Res., Yokohama City University;
Kanako Kawaura, Kihara Inst. Biol. Res., Yokohama City University;
Keiichi Mochida, RIKEN Plant Science Center;
Kaori Igarashi, Meiji University;
Kentaro Yano, School of Agri., Meiji University;
Hiroshi Tarui, RIKEN OSC;
Naoko Suzuki, RIKEN OSC;
Jun Kawai, RIKEN OSC;
Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University
Genome Diversity in Brachypodium distachyon: Deep Sequencing of Highly Diverse Natural Accessions
Sean Gordon, USDA-ARS-WRRC;
Henry Priest, Donald Danforth Plant Science Center;
David L. Des Marais, The University of Texas at Austin;
Wendy Schackwitz, DOE Joint Genome Institute;
Ludmila Tyler, University of California, Berkeley/USDA;
Doug Bryant, Donald Danforth Plant Science Center;
Joel Martin, DOE Joint Genome Institute;
Wenqin Wang, Waksman Institute, Rutgers University;
Anna Lipzen, DOE Joint Genome Institute;
Kerrie Barry, DOE Joint Genome Institute;
Antonio Manzaneda, Universidad de Jaen;
Christopher Schwartz, University of Wisconsin, GLBRC;
Richard Amasino, University of Wisconsin;
David Garvin, USDA-ARS, PSRU;
Hikmet Budak, Sabanci University;
Joachim Messing, Rutgers University;
Metin Tuna, Namik Kemal University;
Thomas Mitchell-Olds, Duke University, Dept. of Biology;
Daniel S. Rokhsar, DOE Joint Genome Institute;
Len Pennacchio, DOE Joint Genome Institute;
Ana Caicedo, University of Massachusetts;
Samuel P Hazen, University of Massachusetts;
Thomas Jeunger, University of Texas at Austin;
Robert Hasterok, University of Silesia;
John Doonan, John Innes Centre;
Pilar Catalan, University of Zaragoza;
Luis Mur, Aberystwyth University;
Todd C. Mockler, Donald Danforth Plant Science Center;
John Vogel, USDA, ARS, Western Regional Research Center
RNA-Seq and Genome Sequencing of Lolium tenmulentum, a Relative of Perennial Ryegrass
Hongwei Cai, China Agricultural University;
Sanzhen Liu, Iowa State University;
Wei Wu, Iowa State University;
Nana Yuyama, Forage Crop Research Institute, JGFSA;
Mariko Hirata, Forage Crop Research Institute, JGFSA;
Xuanli Guan, China Agricultural University;
Eddy Yeh, Iowa State University;
Patrick S. Schnable, Iowa State University
De novo Transcriptome Profiling of Two Edaphically and Phenotypically Divergent Grasses: Dominant Forage Grass Big Bluestem Andropogon gerardii and Drought-Tolerant Sand Bluestem Andropogon gerardii ssp. hallii
Jennifer M. Shelton, Kansas State University;
Miranda Gray, Kansas State University;
Susan J. Brown, Division of Biology - Kansas State University;
Sanjay Chellapilla, Kansas State University, Bioinformatics Facility;
Alina Akhunova, Kansas State University;
Eduard Akhunov, Kansas State University;
Xuanqiang Liang, Crop Research Institute, GAAS;
Loretta C Johnson, Biology, Kansas State University
Assembly and Validation of an Evolutionary Reference Genome for Flowering Plants (Amborella trichopoda)
Srikar Chamala, University of Florida;
Brandon Walts, University of Florida;
Andre Chanderbali, University of Florida;
Victor A. Albert, University of Buffalo;
Saravanaraj Ayyampalayam, University of Georgia;
James Burnette, University of California, Riverside;
Claude dePamphilis, Penn State University;
Joshua P. Der, Penn State University;
Jamie Estill, University of Georgia;
Tianying Lan, University at Buffalo;
Jim Leebens-Mack, University of Georgia;
Seunghee Lee, Arizona Genomics Institute, University of Arizona;
Hong Ma, State Key Lab of Genet Engin, Sch of Life Sci, Fudan Univ;
Rich Moore, OpGen, Inc.;
Jeff Palmer, University of Indiana;
Paula Ralph, Penn State University;
Danny Rice, Department of Biology, Indiana University;
Steve Rounsley, Dow Agrosciences;
Stephan C. Schuster, Pennsylvania State University;
Lynn P. Tomsho, Pennsylvania State University;
Susan Wessler, University of Californa Riverside;
Yeisoo Yu, Arizona Genomics Institute, University of Arizona;
Yuannian Jiao, Penn State University ;
Nianqing (Nick) Xiao, OpGen, Inc.;
Douglas E. Soltis, University of Florida;
Pamela S. Soltis, University of Florida;
Brad Barbazuk, University of Florida
Deep Sequencing-Based Transcriptome of Brachiaria brizantha Ovaries as a Tool for Development Studies of Sexual and Apomictic Plants
Vera Tavares de Campos Carneiro, University of Brasilia;
Orzenil Bonfim Silva-Junior, EMBRAPA Recursos Genéticos e Biotecnologia;
Erica Duarte Silveira, Pontificia Universidad Catolica Argentina;
Larissa Arrais Guimarães, University of Brasilia;
Marcos Mota Costa, Embrapa Genetic Resources and Biotechnology;
Roberto C. Togawa, Embrapa / Cenargen;
Julio Carlyle Rodrigues, Embrapa Recursos Genéticos e Biotecnologia, Brasília-DF;
Ana Luiza M. Lacerda, University of Brasilia;
Diva Maria de Alencar Dusi, Embrapa Recursos Genéticos e Biotecnologia, Brasília-DF;
Márcio Alves-Ferreira, Federal University of Rio de Janeiro;
André Teixeira Irsigler, Embrapa Genetic Resources and Biotechnology;
Georgios Joannis Pappas, Embrapa
Genomics of Compositae Crops: EST Libraries, and Evidence of Hybridization with Wild Relatives
Kay Hodgins, University of British Columbia;
Zhao Lai, Department of Biology, Indiana University;
Luiz Oliveira, Universidade Federal de Vicosa;
David W. Still, Cal Poly Pomona;
Michael S. Barker, University of Arizona;
Hannes Dempewolf, University of British Columbia;
John M Burke, Department of Plant Biology, University of Georgia;
Richard Michelmore, Genome Center, University of California;
Loren Rieseberg, University of British Columbia
Soybean Ethylene Biosynthesis Genes Potentially Involved in Drought Tolerance
Maria Fatima Grossi de Sa, Embrapa;
Fabricio B.M. Arraes, UFRGS;
Regina M.S. Amorim, Embrapa Genetic Resources and Biotechnology;
Magda A. Beneventi, Embrapa Genetic Resources and Biotechnology;
Erika V S Albuquerque, Embrapa;
Raquel S. Oliveira, UCB;
Alexandre Nepomuceno, Embrapa Soybean;
Ricardo Abdelnoor, Embrapa Soybean;
Maria E.L. Sa, Embrapa Genetic Resources and Biotechnology
Gene Complements of Lactuca sativa and its Wild Progenitor Lactuca serriola
Alexander Kozik, UC Davis Genome Center;
Dean Lavelle, UC Davis Genome Center;
Sebastian Reyes-Chin-Wo, UC Davis Genome Center;
Lutz Froenicke, Genome Center, University of California;
Zhiwen Wang, BGI Shenzhen;
Chi Song, BGI Shenzhen;
Xun Xu, BGI;
Bicheng Yang, BGI Shenzhen;
Richard Michelmore, Genome Center, University of California
Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola
Dean Lavelle, University of California;
Sebastian Reyes-Chin-Wo, Authors contributed equally to this work;
Zhiwen Wang, BGI Shenzhen;
Chi Song, BGI Shenzhen;
Alexander Kozik, UC Davis Genome Center;
Lutz Froenicke, Genome Center, University of California;
Maria Jose Truco, Genome Center, University of California;
Christopher Beitel, Genome Center, University of California;
Xun Xu, BGI;
Bicheng Yang, BGI Shenzhen;
Richard Michelmore, Genome Center, University of California
Technological Resort for the Advancement of Animal Genomic Research “GenHome”
John Williams, Parco Tecnologico Padano;
Alessandra Stella, FPTP;
Paolo Ajmone Marsan, Inst. of Zootechnics, Università Cattolica del S. Cuore;
Giulio Pagnacco, University of Milan;
Pasqualino Loi, University of Teramo;
Nicolò P. P. Macciotta, University of Sassari;
Giulietta Minozzi, Parco Tecnologico Padano;
Francesco Strozzi, Parco Tecnologico Padano;
Daniela Iamartino, Parco Tecnologico Padano;
Stefania Chessa, Institute of Agricultural Biology & Biotechnology - CNR;
Bianca Castiglioni, Institute of Agricultural Biology & Biotechnology - CNR
De novo Genome Sequencing of Salicornia: Generating Model Genomic Resource for Halophytes
Mohammad Suhail Khan, King Abdullah University of Science and Technology;
Yung Shwen Ho, King Abdullah University of Science and Technology;
Shahjahan Ali, King Abdullah University of Science and Technology;
Thomas D. Otto, Wellcome Trust Sanger Institute;
Arnab Pain, King Abdullah University of Science and Technology;
Nina V. Fedoroff, King Abdullah University of Science and Technology
Current Progress of Genomics for Panax ginseng C.A. Meyer
Tae-Jin Yang, Seoul National University;
Sang-Choon Lee, Seoul National University;
Jee Young Park, Seoul National University;
Hyejoon Joo, Seoul National University;
Hong-Il Choi, Seoul National University;
Nam-Hoon Kim, Seoul National University;
Junki Lee, Seoul National University;
Hyun-Seung Park, Seoul National University;
Woojong Jang, Seoul National University;
HyunJoo Lee, Seoul National University;
Nomar Espinosa Waminal, Seoul National University;
Murukarthick Jayakodi, Seoul National University;
Beomsoon Choi, NICEM, Seoul National University
Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense
Yingjie Zhu, Institute of Medicinal Plant Development, CAMS & PUMC;
Jiang Xu, Institute of Medicinal Plant Development, CAMS & PUMC;
Chao Sun, Institute of Medicinal Plant Development, CAMS & PUMC;
Xiang Luo, Institute of Medicinal Plant Development, CAMS & PUMC;
Jingyuan Song, Institute of Medicinal Plant Development, CAMS & PUMC;
Shilin Chen, Institute of Medicinal Plant Development, CAMS & PUMC
Sequencing of the Radish Genome
Jeong-Hwan Mun, National Academy of Agricultural Science, RDA;
Hee-Ju Yu, The Catholic University of Korea;
Namshin Kim, Korean Bioinformation Center, KRIBB;
Ki-Byung Lim, Kyungpook National University;
Mijin Oh, National Academy of Agricultural Science, RDA;
Bumjin Kim, National Academy of Agricultural Science, RDA;
Beom-Seok Park, The Agricultural Genome Center, NAAS, RDA;
Won-Hyong Chung, Korean Bioinformation Center, KRIBB;
Hee Chung, The Catholic University of Korea;
Young-Min Jeong, The Catholic University of Korea;
Yoon-Jung Hwang, Kyungpook National University
Phylogenetic Analyses of Citrus LRR-RLKs
Diogo M. Magalhães, Centro de Citricultura Sylvio Moreira, IAC;
Valéria Mafra, Centro de Citricultura Sylvio Moreira, IAC;
Marco A. Takita, Centro de Citricultura Sylvio Moreira, IAC;
Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC;
Alessandra Alves de Souza, Centro de Citricultura Sylvio Moreira, IAC
Draft Genome Sequence of European Pear (Pyrus communis L)
Satoshi Yuhara, Takara Bio Inc.;
Katsuhiro Shiratake, Nagoya University;
Hitoshi Mori, Nagoya University;
Kanji Isuzugawa, Yamagata Integrated Agricultural Research Center;
Akira Oikawa, RIKEN PSC;
Yoshiyuki Ogata, Osaka Prefecture University;
Yoshimasa Tsujimoto, Takara Bio Inc.;
Toshiharu Ohba, Takara Bio Inc.;
Masanori Takayama, Takara Bio Inc.;
Masanari Kitagawa, Takara Bio Inc.
454 Pyrosequencing Based Transcriptome Analysis for Fruit Skin of Mango, Mangifera indica
Naoya Uraski, Okinawa Prefectural Agricultural Research Center;
Ayano Shudo, Okinawa Prefectural Agricultural Research Center;
Kazuhiko Tarora, Okinawa Prefectural Agricultural Research Center;
Satoko Goeku, Okinawa Prefectural Agricultural Research Center;
Yuko Makishi, Okinawa Prefectural Agricultural Research Center, Nago;
Yoshino Shimabukuro, Okinawa Prefectural Agricultural Research Center, Nago;
Osamu Jahana, Okinawa Prefectural Agricultural Research Center, Nago;
Satoshi Nakasone, Okinawa Prefectural Agricultural Research Center, Nago;
Moriyuki Shoda, Okinawa Prefectural Agricultural Research Center, Nago
Ordering Draft Genome Sequence of Flax (Linum usitatissimum)
Frank M. You, Agriculture and Agri-Food Canada;
Santosh Kumar, Agriculture and Agri-Food Canada;
Mitali Banik, Agriculture and Agri-Food Canada;
Raja Ragupathy, Agriculture and Agri-Food Canada;
Michael K. Deyholos, University of Alberta;
Yong-Bi Fu, Agriculture and Agri-Food Canada;
Andrew G. Sharpe, National Research Council;
Sylvie Cloutier, Agriculture and Agri-Food Canada
Decoding Flax Genome for Structural Genomics and Functional Insights into Yield Genes
Prasanta K Dash, National Research Centre on Plant Biotechnology;
Abdul K Jailani, National Research Centre on Plant Biotechnology;
Payal Gupta, National Research Centre on Plant Biotechnology;
Raju Datla, National Research Council Canada;
Michael K. Deyholos, University of Alberta;
Polumetla Ananda Kumar, National Research Centre on Plant Biotechnology
RNA-Seq Analysis and de novo Transcriptome Assembly of Coffea arabica and Coffea eugenioides
Priscila Mary Yuyama, CIRAD;
Marcelo Falsarella Carazzolle, Genomics and Expression Laboratory- UNICAMP;
Osvaldo Reis Júnior, Universidade Estadual de Campinas;
Jaime Hikaru Mishima, Universidade Estadual de Campinas;
Suzana Tiemi Ivamoto, Instituto Agronômico do Paraná;
Douglas Silva Domingues, Instituto Agronômico do Paraná;
Pierre Charmetant, Instituto Agronômico do Paraná;
Thierry Leroy, CIRAD;
Luiz Filipe Protasio Pereira, Embrapa Café
mRNA-Seq Assisted Discovery of Genetic Programs Involved in Root Meristem Activity and Exhaustion in a Sonoran Desert Cactaceae
Svetlana Shishkova, Instituto de Biotecnología, UNAM;
Marta Matvienko, CLC bio;
Jesús Montiel, Instituto de Biotecnología, UNAM;
Mayra Lopez-Valle, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico;
Yamel Ugartechea-Chirino, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico;
Selene Napsucialy-Mendivil, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico;
Alexander Kozik, Genome Center, University of California - Davis;
Joseph G. Dubrovsky, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico
Small RNA Expression Profiles During Determinate Primary Root Growth in Cardon Pachycereus pringlei (Cactaceae)
Svetlana Shishkova, Instituto de Biotecnología, UNAM;
Marta Matvienko, CLC bio;
Selene Napsucialy-Mendivil, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico;
Janet McDowell, Life Technologies;
Nancy Fong, Life Technologies;
Joseph G. Dubrovsky, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico
Vertebrate Genome Biology at the Broad Institute
Jeremy Johnson, Broad Institute;
Jessica Alfoldi, Broad Institute;
Jason Turner-Maier, Broad Institute;
Marcia Lara, Broad Institute;
Ross Swofford, Broad Institute;
Michele Perloski, Broad Institute;
Eric Lander, Broad Institute;
Federica DiPalma, Broad Institute;
Kerstin Lindblad-Toh, Science for Life Laboratory, Uppsala University
Extensive DNA Variant Detection in a Cattle Population by Low-Coverage Re-Sequencing
Bernhard Franz Aigner, Chair of Animal Breeding - Technische Universität München;
Sandra Jansen, Chair of Animal Breeding - Technische Universität München;
Hubert Pausch, Chair of Animal Breeding - Technische Universität München;
Michal Wysocki, Chair of Animal Breeding - Technische Universität München;
Sebastian Eck, Institute of Human Genetics - Helmholtz Zentrum München;
Anna Benet-Pagès, Institute of Human Genetics - Helmholtz Zentrum München;
Thomas Wieland, Institute of Human Genetics - Helmholtz Zentrum München;
Elisabeth Graf, Institute of Human Genetics - Helmholtz Zentrum München;
Tim Strom, Institute of Human Genetics - Helmholtz Zentrum München;
Thomas Meitinger, Institute of Human Genetics - Helmholtz Zentrum München;
Ruedi Fries, Chair of Animal Breeding - Technische Universität München
Automatic Workflow to Compare Variants Between Genomes
Cecilie Boysen, CLC bio;
Anika Joecker, CLC bio;
Marta Matvienko, CLC bio;
J.- Uwe Appelt, CLC bio;
Liselotte Kahns, CLC bio;
Søren Mønsted, CLC bio;
Jacob Grydholt, CLC bio;
Bjarne Knudsen, CLC bio;
Martin Bundgaard, CLC bio;
Jonas Buur Sinding, CLC bio;
Henrik Handberg, CLC bio;
Anne-Mette K. Hein, CLC bio;
Mikkel Nygaard Ravn, CLC bio;
Andreas Joecker, CLC bio;
Morten Værum, CLC bio;
Roald Forsberg, CLC bio
Sequencing and Assembly of the Asian seabass Transcriptome
Natascha May Thevasagayam, Temasek Life Sciences Laboratory;
Sai Rama Sridatta Prakki, Temasek Life Sciences Laboratory;
Junhui Jiang, Temasek Life Sciences Laboratory;
Jolly M. Saju, Temasek Life Sciences Laboratory;
Hsiao Yuen Kwan, Temasek Life Sciences Laboratory;
Woei Chang Liew, Temasek Life Sciences Laboratory;
Purushothaman Kathiresan, Temasek Life Sciences Laboratory;
Jun Hong Xia, Temasek Life Sciences Laboratory;
Gen Hua Yue, Temasek Life Sciences Laboratory;
Laszlo Orban, Temasek Life Sciences Laboratory
A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)
Christopher M. Seabury, Texas A&M University;
Scot E. Dowd, Molecular Research LP;
Paul M. Seabury, ElanTech Inc;
Terje Raudsepp, Texas A&M University;
Donald J. Brightsmith, Texas A&M University;
Poul Liboriussen, CLC bio;
Yvette A. Halley, Texas A&M University;
Colleen A. Fisher, Texas A&M University;
Elaine Owens, Texas A&M University;
Ganesh Viswanathan, Texas A&M University;
Ian R. Tizard, Texas A&M University
The Draft Genome of a C4 Dicot, Amaranthus hypochondriacus
Meeta Sunil, Institute of Bioinformatics and Applied Biotechnology;
Arun K. Hariharan, Institute of Bioinformatics and Applied Biotechnology;
Soumya Nayak, Institute of Bioinformatics and Applied Biotechnology;
Neeraja M. Krishnan, Institute of Bioinformatics and Applied Biotechnology;
Jayanth Balakuntla, Institute of Bioinformatics and Applied Biotechnology;
Kunal Dhas, Institute of Bioinformatics and Applied Biotechnology;
Mohit Verma, Institute of Bioinformatics and Applied Biotechnology;
Saurabh Gupta, Institute of Bioinformatics and Applied Biotechnology;
Manjari Deshmukh, Institute of Bioinformatics and Applied Biotechnology;
Swetansu Pattnaik, Institute of Bioinformatics and Applied Biotechnology;
Ravi P. Gupta, Institute of Bioinformatics and Applied Biotechnology;
Bibha Choudhary, Institute of Bioinformatics and Applied Biotechnology;
Binay Panda, Institute of Bioinformatics and Applied Biotechnology;
Subhashini Srinivasan, Institute of Bioinformatics and Applied biotechnology
