2Genome Sequencing & ESTs
Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Serendipitomics: A New Virus Found on an RNA-Seq Library
Giovanni Marques de Castro, UNICAMP;
Leonardo Silva Boiteux, Embrapa Hortaliças;
Maria Esther de Noronha Fonseca, Embrapa Hortaliças;
Francisco P. Lobo, Embrapa Informática Agropecuária;
Elibio Rech, EMBRAPA;
Felipe Rodrigues da Silva, Embrapa Informatica Agropecuaria
Multi-K-Mer de novo Transcriptome Assembly, Validation, and Count Summarizing for Four Plant Taxa
Jennifer M. Shelton, Kansas State University;
Nic Herndon, Kansas State University;
Miranda M Gray, Cornell University;
Hanquan Liang, Integrative Genomics Facility, Kansas State University;
Timothy Durrett, Kansas State University;
Loretta Johnson, Kansas State University, Division of Biology;
Alina Akhunova, Integrated Genomics Facility;
Susan J. Brown, Division of Biology - Kansas State University
Novel Method for Multiplex Small-RNA Library Preparation with Improved Performance and Higher Sensitivity
Deyra N. Rodriguez, New England Biolabs;
Daniela B. Munafo, New England Biolabs;
Larry McReynolds, New England Biolabs;
Bradley W. Langhorst, New England Biolabs;
Lynne M. Apone, New England Biolabs;
Pingfang Liu, New England Biolabs;
Vaishnavi Panchapakesa, New England Biolabs;
Christine J. Sumner, New England Biolabs;
Christine Chater, New England Biolabs;
Erbay Yigit, New England Biolabs;
Joanna Bybee, New England Biolabs;
Laurie Mazzola, New England Biolabs;
Fiona J. Stewart, New England Biolabs;
Eileen T. Dimalanta, New England Biolabs;
Theodore B. Davis, New England Biolabs
Genome Assembly and Analysis of the Maize (Zea mays L.) Iodent Inbred PH207
Ilya Soifer, NRGENE LTD.;
Omer Barad, NRGENE;
Radhika S. Khetani, University of Illinois Urbana-Champaign, HPCBio;
Alvaro Hernandez, Roy J. Carver Biotechnology Center;
Chris Wright, Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign;
Christopher J. Fields, University of Illinois Urbana-Champaign, HPCBio;
Alex B. Brohammer, University of Illinois Urbana-Champaign;
Klaus Koehler, Dow AgroSciences;
Clive Evans, Dow AgroSciences;
Jan Erik Backlund, Dow AgroSciences;
Oswald R. Crasta, Dow AgroSciences;
Kobi Baruch, NRGENE LTD.;
Gil Ronen, NRGENE;
Guy Kol, NRGENE LTD.;
Mark A. Mikel, Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign
Finish of Clone-By-Clone Sequencing of Wheat 6B Chromosome with Next-Generation Sequencer
Hiroyuki Kanamori, National Institute of Agrobiological Sciences;
Kanako Kurita, National Institute of Agrobiological Sciences;
Satoshi Katagiri, National Institute of Agrobiological Sciences;
Hiroko Fujisawa, National Institute of Agrobiological Sciences;
Wataru Karasawa, National Institute of Agrobiological Sciences;
Masao Hamada, National Institute of Agrobiological Sciences;
Fuminori Kobayashi, National Institute of Agrobiological Sciences;
Michihiko Shimomura, Mitsubishi Space Software Co.,Ltd.;
Hiroshi Ikawa, Mitsubishi Space Software Co.,Ltd.;
Nobukazu Namiki, Mitsubishi Space Software Co.,Ltd.;
Kaori Kamatsuki, Mitsubishi Space Software Co.,Ltd.;
Jun Kawai, RIKEN PMI;
Takashi Matsumoto, National Institute of Agrobiological Sciences;
Yuichi Katayose, National Institute of Agrobiological Sciences;
Jianzhong Wu, National Institute of Agrobiological Sciences;
Hirokazu Handa, National Institute of Agrobiological Sciences
The Vigna Genome Project
Hiroaki Sakai, National Institute of Agrobiological Sciences, Japan;
Ken Naito, National Institute of Agrobiological Sciences;
Eri Tanaka-Ogiso, National Institute of Agrobiological Sciences;
Akito Kaga, National Institute of Agrobiological Sciences;
Takeshi Itoh, National Institute of Agrobiological Sciences;
Norihiko Tomooka, National Institute of Agrobiological Sciences
A Chromosomal Genomics Approach to Assess and Validate the Desi and Kabuli Draft Chickpea Genome Assemblies
Pradeep Ruperao, University of Western Australia;
Philipp Emanuel Bayer, University of Queensland;
Kenneth Chan, University of Queensland;
Sarwar Azam, ICRISAT;
Miroslava Havránková, Institute of Experimental Botany;
Satomi Hayashi, University of Queensland;
Jana Cizkova, Institute of Experimental Botany;
Rachit K Saxena, ICRISAT;
Hana Simkova, Institute of Experimental Botany;
Chi Song, BGI;
Jan Vrana, Institute of Experimental Botany;
Annapurna Chitikineni, ICRISAT;
Pooran M. Gaur, ICRISAT;
Teresa Millan, University of Cordoba;
Karam Singh, The University of Western Australia;
Bunyamin Taran, University of Saskatchewan;
Jun Wang, BGI;
Jacqueline Batley, University of Queensland;
Jaroslav Doležel, Institute of Experimental Botany;
Rajeev Varshney, ICRISAT;
David Edwards, University of Queensland
Identification of Transcript Polymorphisms for Seed Quality Improvement By Exploring Soybean Genetic Diversity
Yong-Qiang (Charles) An, USDA-ARS, PGRU;
Wolfgang Goettel, USDA-ARS Plant Genetics Research at Danforth Plant Science Center;
Eric Xia, University of Illinois;
Robert Upchurch, USDA-ARS, SNFRU;
Mingli Wang, USDA-ARS, PGRCU;
Zongrang Liu, USDA-ARS, AFRS;
Pengyin Chen, University of Arkansa
Second Draft of Pigeonpea Genome
Ajay Kumar Mahato, National Research Centre on Plant Biotechnology;
Kishore Gaikwad, ICAR-National Research Centre on Plant Biotechnology;
T. R. Sharma, National Research Centre on Plant Biotechnology;
N. K. Singh, National Research Centre on Plant Biotechnology
Genome Sequence Analysis Reveals the Evolution of Pungency in Capsicum Spp
Seungill Kim, Department of Plant Science, Plant Genomics and Breeding Institute and Interdisciplinary Program in Agricultural Genomics, Seoul National University;
Minkyu Park, Dept. of Genetics, University of Georgia;
Seon-In Yeom, Department of plant science, PGBI of CALS, SNU;
Yong-Min Kim, Seoul National University;
Je Min Lee, Seoul National University;
Hyun-Ah Lee, Seoul National University;
Eunyoung Seo, Seoul National University;
Doil Choi, Seoul National University
Chromosome-Scale Assembly of the Lettuce (Lactuca sativa) Genome Using Genotyping By Shotgun Sequencing (GBSS)
Alexander Kozik, Genome Center, University of California;
Lutz Froenicke, Genome Center, University of California;
Dean Lavelle, Genome Center, University of California;
Maria Jose Truco, Genome Center, University of California;
Huaqin Xu, Genome Center, University of California;
Sebastian Reyes Chin-Wo, Genome Center, University of California;
Richard Michelmore, Genome Center, University of California
A Draft Genome of the King of Fruit, Mango (Mangifera indica L.)
N. K. Singh, National Research Center on Plant Biotechnology;
Ajay Kumar Mahato, National Research Center on Plant Biotechnology;
Nimisha Sharma, ICAR-Indian Agricultural Research Institute;
Kishore Gaikwad, National Research Center on Plant Biotechnology;
Manish Srivastava, Fruits and Horticultural Technology;
Kapil Tiwari, National Research Center on Plant Biotechnology;
Vivek Dogra, National Research Center on Plant Biotechnology;
Hukam Chand Rawal, National Research Center on Plant Biotechnology;
Pawan Jayaswal, National Research Center on Plant Biotechnology;
Akshay Singh, ICAR-National Research Centre on Plant Biotechnology;
Vandana Rai, National Research Center on Plant Biotechnology;
Amitha Mithra S. V., ICAR-National Research Centre on Plant Biotechnology;
Anju Bajpai, ICAR-Central Institute for Subtropical Horticulture;
M. R. Dinesh, Indian Institute of Horticultural Research;
K. V. Ravishankar, Indian Institute of Horticultural Research;
S Rajan, Central Institute for Subtropical Horticulture;
Anil Rai, Indian Agricultural Statistics Research Institute;
A. K. Singh, Fruits and Horticultural Technology;
T. R. Sharma, National Research Center on Plant Biotechnology
Coconut Genome de novo Sequencing
Burair Alsaihati, Joint Center for Genomics Research, KACST & CAS;
Wanfei Liu, Joint Center for Genomics Research, KACST & CAS;
Qiang Lin, Joint Center for Genomics Research, KACST & CAS;
Ibrahim S AlMssallem, Joint Center for Genomics Research, KACST & CAS
The Chestnut Genome Project
John E. Carlson, Pennsylvania State University;
M. Staton, Clemson University Genomics Institute;
Nurul Islam-Faridi, Southern Institute of Forest Genetics, US Forest Service;
Charles Addo-Quaye, Purdue University;
Nathaniel Cannon, Penn State University;
Lynn P. Tomsho, Pennsylvania State University;
Stephen P. Ficklin, Washington State University;
Christopher Saski, Clemson University Genomics Institute;
Richard Burhans, Pennsylvania State University;
Daniela Drautz, Nanyang Technological University;
Tyler Kane Wagner, Pennsylvania State University;
Nicole Zembower, Pennsylvania State University;
Stephan Schuster, Pennsylvania State University;
Albert G. Abbott, Clemson University;
C. Dana Nelson, Southern Institute of Forest Genetics, US Forest Service SRS;
F. Hebard, The American Chestnut Foundation Meadowview Research Farms
Genome Sequence of a Rubber tree Hevea brasiliensis
Yasukazu Nakamura, Genome Informatics Laboratory, NIG, ROIS;
Hideki Nagasaki, National Institute of Genetics, ROIS;
Yasuhiro Tanizawa, National Institute of Genetics, ROIS, JAPAN;
Keigo Inami, Central Research NR R&D Department, Bridgestone Co.;
Teppei Mori, Central Research NR R&D Department, Bridgestone Co.;
Kimie Watanabe, Central Research NR R&D Department, Bridgestone Co.
Exploring the Genetic Regulation of Determinate Root Growth in Cactaceae
Svetlana Shishkova, Instituto de Biotecnología, UNAM;
Marta Matvienko, CLC bio;
Andres Cuevas-Moreira, Instituto de Biotecnología, UNAM;
Gustavo Rodriguez-Alonso, Instituto de Biotecnología, UNAM;
Mayra Lopez-Valle, Instituto de Biotecnología, UNAM;
Joseph G. Dubrovsky, Instituto de Biotecnología, UNAM
Draft Genome Sequence of the Common Ice Plant (Mesembryanthemum crystallinum L.) a Facultative Crassulacean Acid Metabolism (CAM) and Halophytic Plant Model
Jungmin Ha, Department of Biochemistry and Molecular Biology, University of Nevada, Reno;
Bernard Wone, University of Nevada, Reno;
Won Cheol Yim, Department of Biochemistry and Molecular Biology, University of Nevada, Reno;
Rebecca L. Albion, Department of Biochemistry and Molecular Biology, University of Nevada, Reno;
Karen A. Schlauch, Nevada Center for Bioinformatics, University of Nevada, Reno;
Hengfu Yin, Biosciences Division, Oak Ridge National Laboratory;
John C. Cushman, Department of Biochemistry and Molecular Biology, University of Nevada, Reno
Evolutionary Gain and Loss of Function in Parasitic Plant Genomes
Loren Honaas, Penn State University;
Eric Kenneth Wafula, Penn State University;
Paula Ralph, Penn State University;
Yeting Zhang, Penn State University;
Zhenzhen Yang, Penn State University;
Lena Landherr, Penn State University;
Norman Wickett, Chicago Botanical Garden;
Kan Huang, University of Virginia;
Yongde Bao, University of Virginia;
Monica Fernandez-Aparicio, Virginia Tech University;
Malay Das, Presidency University;
Pradeepa Bandaranayake, Department of Crop Science, University of Peradeniya;
Biao Wu, University of California-Davis;
Kristen Clermont, Virginia Tech University;
Eva Collakova, Virginia Tech University;
Michael P. Timko, University of Virginia;
John Yoder, University of California-Davis;
Claude dePamphilis, Penn State University;
James H. Westwood, Virginia Tech University
Genome Sequencing of the Moss Funaria hygrometrica
Péter Szövényi, University of Zurich;
Mariana Ricca, University of Zurich;
Stefan A. Rensing, Faculty of Biology, University of Marburg;
Lucy Poveda, FGCZ University of Zurich and ETH;
Andreas Wagner, University of Zurich
Genomic Characterisation of Seagrass (Zostera muelleri), a Plant Adapted to Life in the Submerged Marine Environment
Agnieszka Golicz, University of Queensland;
Lars Smits, University of Queensland;
Philipp Emanuel Bayer, University of Queensland;
Kenneth Chan, University of Queensland;
Jacqueline Batley, University of Queensland;
Satomi Hayashi, University of Queensland;
Rudy Dolferus, CSIRO;
Martin Schliep, University of Technology Sydney;
Peter Ralph, University of Technology Sydney;
David Edwards, University of Queensland
Genome Sequencing of the Charophycean Green Alga, Chara braunii
Tomoaki Nishiyama, Kanazawa University;
Atsushi Toyoda, Comparative Genomics laboratory, NIG, ROIS;
Yutaka Suzuki, University of Tokyo;
Asao Fujiyama, Comparative Genomics laboratory, NIG, ROIS;
Hidetoshi Sakayama, Kobe University
Comparative Genomic Analysis Between Pathogenic and Non-Pathogenic Strains of Pasteurella multocida
Mauricio Cantao, Embrapa Swine and Poultry;
J. X. de Oliveira Filho, Federal University of Rio Grande do Sul;
J. D. Kich, Embrapa Swine and Poultry National Research Center;
C. S. Klein, Embrapa Swine and Poultry National Research Center;
Ricardo Zanella, EMBRAPA/CNPq;
M. A. Z. Mores, Embrapa Swine and Poultry National Research Center;
R. Rebelatto, Embrapa Swine and Poultry National Research Center;
N. Mores, Embrapa Swine and Poultry National Research Center
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
Stephanie M. Guida, The National Center for Genome Resources;
Kelly B. Schilling, The National Center for Genome Resources;
Connor T. Cameron, National Center for Genome Resources (NCGR);
Peter B. Ngam, The National Center for Genome Resources;
Jennifer L. Jacobi, The National Center for Genome Resources;
Pooja E. Umale, National Center for Genome Resources (NCGR);
Ken A. Seal, The National Center for Genome Resources;
Mary K. Myers, The National Center for Genome Resources;
Robin S. Kramer, The National Center for Genome Resources;
Arvind K. Bharti, The National Center for Genome Resources;
John A. Crow, The National Center for Genome Resources;
Callum J. Bell, The National Center for Genome Resources
The Use of Population-Scale Sequencing to Identify CNVs Impacting Productive Traits in Different Cattle Breeds
Derek Bickhart, Animal Genomics and Improvement Laboratory, ARS-USDA;
Lingyang Xu, University of Maryland;
Jana L Hutchison, Animal Genomics and Improvement Laboratory, ARS-USDA;
Tad S. Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS;
Curtis P. VanTassell, Animal Genomics and Improvement Laboratory, USDA-ARS;
Steven G. Schroeder, Animal Genomics and Improvement Laboratory, USDA-ARS;
Jose Fernando Garcia, Sao Paulo State University / UNESP;
Jeremy Taylor, Division of Animal Science, University of Missouri;
Robert Schnabel, University of Missouri;
Harris Lewin, University of California, Davis;
George Liu, Animal Genomics and Improvement Laboratory, ARS-USDA
Genomic Resources for North American Hardwoods
John E. Carlson, Penn State University;
M. Staton, Clemson University Genomics Institute;
Charles Addo-Quaye, Purdue University;
Jeanne Romero-Severson, University of Notre Dame;
Scott Schlarbaum, University of Tennessee;
Mark Coggeshall, University of Missouri;
Haiying Liang, Clemson University;
Oliver Gailing, Michigan Technological University;
Ketia Shumaker, The University of West Alabama;
Teodora Orendovici-Best, Pennsylvania State University;
Nicole Zembower, Pennsylvania State University;
Nicholas Wheeler, Pennsylvania State University
Small RNA Regulation in Barley under Different Phosphorous Conditions
Bujun Shi, University of Adelaide;
Michael Hackenberg, University of Granada;
Po-Jung Huang, Bioinformatics Center, Chang Gung University, Taoyuan, Taiwan;
Chunyuan Huang, Australian Centre for Plant Functiona Genomics, the University of Adelaide, Australia;
J. Perry Gustafson, University of Missouri;
Peter Langridge, Australian Centre for Plant Functional Genomics
Sequencing the MTP BAC Clones of Aegilops tauschii Chromosome Arm 3DS
Naxin Huo, Department of Plant Sciences, University of California;
Shuhong Ouyang, China Agricultural University;
Yi Wang, University of California, Davis;
Karin Deal, University of California, Davis;
Yong Liang, China Agricultural University;
Jianwei Zhang, University of Arizona;
Mingcheng Luo, University of California, Davis;
Zhiyong Liu, China Agricultural University;
Qixin Sun, China Agricultural University;
Pat McGuire, Department of Plant Sciences, University of California, Davis;
Olin Anderson, USDA-ARS-WRRC;
Yong Q. Gu, USDA ARS, Western Regional Research Center;
Jan Dvorak, Department of Plant Sciences, University of California
Vertebrate Genome Biology at the Broad Institute
Jeremy Johnson, Broad Institute;
Jessica Alfoldi, Broad Institute;
Michele Koltookian, Broad Institute;
Ross Swofford, Broad Institute;
Jason Turner-Maier, Broad Institute;
Eric Lander, Broad Institute;
Federica DiPalma, Broad Institute;
Kerstin Lindblad-Toh, Science for Life Laboratory, Uppsala University
