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Marker Systems Diversity: SNP

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
P752
SNP Arrays in Crop Plants – Features of Currently Available Genotyping Arrays at TraitGenetics
Joerg Plieske, TraitGenetics GmbH; Ralf Wieseke, TraitGenetics GmbH; Hartmut Luerssen, TraitGenetics GmbH; Eva-Maria Graner, TraitGenetics GmbH; Andreas Polley, TraitGenetics GmbH; Martin W. Ganal, TraitGenetics GmbH

P753
Optimized Marker Sets for Plant Breeding Based on Array Data
Martin W. Ganal, TraitGenetics GmbH; Joerg Plieske, TraitGenetics GmbH; Ralf Wieseke, TraitGenetics GmbH; Andreas Polley, TraitGenetics GmbH

P754
Accelerated Marker Assisted Selection/ Breeding Using High Throughput KASP Genotyping and KASP LGC SNPline Workflow
Darshna Vyas, LGC Genomics

P755
A Pipeline for Robust Marker Calling from Infinium SNP Arrays for Diploid Crops
W. Eric Van de Weg, Plant Breeding Wageningen University & Research centre; Mario Di Guardo, Foundation Edmund Mach & Plant Breeding Wageningen-UR; Herma Koehorst-Putten, Plant Breeding Wageningen University & Research centre; Sara Longhi, Plant Breeding Wageningen University & Research centre; Yolanda Noordijk, Plant Breeding Wageningen University & Research centre; Helene Muranty, INRA; Elisa Banchi, Fondazione E. Mach, San Michele all’Adige, Italy; Luca Bianco, Research and Innovation Centre, Edmund Mach Foundation; Michela Troggio, Research and Innovation Center; Riccardo Velasco, Fondazione E. Mach; Fabrizio Costa, Fondazione Edmund Mach; Richard Visser, Wageningen UR Plant Breeding

P756
Genotyping By Sequencing on a Worldwide Collection of Maize Inbreds, Landraces and Teosintes
Fei Lu, Postdoc research associate; Jeffrey C. Glaubitz, Institute for Genomic Diversity, Cornell University; Edward S. Buckler, Institute for Genomic Diversity, Cornell University

P757
Functional SNP in Sugarcane through Transcriptome Analyses
Estela A. Costa, University of Campinas; Claudio B. C. Silva, University of Campinas; Renato Vicentini, Universidade Estadual de Campinas (UNICAMP); Melina C. Mancini, University of Campinas - UNICAMP; Luciana R. Pinto, Centro de Cana, Instituto Agronômico; Anete P. Souza, University of Campinas

P758
SNP Markers in Four Candidate Genes Associated with Recurrent Selection for Dry Matter Digestibility in Divergent Switchgrass Populations
Shiyu Chen, University of Wisconsin-Madison, Dept. of Agronomy; Shawn Kaeppler, Department of Agronomy and DOE Great Lakes Bioenergy Research Center, University of Wisconsin - Madison; Kenneth P. Vogel, USDA-ARS; Michael Casler, USDA Dairy Forage Research Center

P759
Identification of Gamma-Radiation Induced Brachypodium Mutations in Cellulose Synthase By Tilling
Yong Weon Seo, Korea University; Man Bo Lee, Korea University; Jae Yoon Kim, University of Florida - IFAS; Dae Yeon Kim, Korea University; Yong Jin Lee, Korea University; Jin Seok Yoon, Korea University; Woo Joo Jung, Korea University; Sang Heon Kim, Korea University; Oon Ha Shin, Korea University

P760
Genotyping By Sequencing in Fruit Tree Species
Cecilia H. Deng, The New Zealand Institute for Plant & Food Research Limited; Elena Hilario, The New Zealand Institute for Plant & Food Research Limited; Paul Datson, The New Zealand Institute for Plant & Food Research Limited; Susan E Gardiner, The New Zealand Institute for Plant & Food Research Limited; Lorna Barron, The New Zealand Institute for Plant & Food Research Limited; Chris Kirk, The New Zealand Institute for Plant & Food Research Limited; Satish Kumar, The New Zealand Institute for Plant & Food Research Limited; Jibran Tahir, Massey University, New Zealand; Nihal De Silva, The New Zealand Institute for Plant & Food Research Limited; David Chagne, The New Zealand Institute for Plant & Food Research Limited

P761
Identification, Genetic Diversity and Population Substructure in Cassava Using RAD Sequencing
Jorge A. Duitama Castellanos, International Center for Tropical Agriculture (CIAT); Claudia Perea, International Center for Tropical Agriculture – CIAT; Carolina Ballén, International Center for Tropical Agriculture – CIAT; Joe Tohme, International Center for Tropical Agriculture – CIAT; Daniel Debouck, International Center for Tropical Agriculture – CIAT; Clair Hershey, International Center for Tropical Agriculture – CIAT; L. Augusto Becerra Lopez-Lavalle, International Center for Tropical Agriculture, CIAT

P762
de novo Transcriptome Assembly and SNP Markers Discovery in Sweetpotato
Qiang Li, Sweetpotato Research Institute, CAAS; Meng Kou, Sweetpotato Research Institute, CAAS; Yu Wang, Jiangsu Normal University/SPRI, CAAS; Jia-Lei Xu, Sweetpotato Research Institute, CAAS; Ya-Ju Liu, Sweetpotato Research Institute, CAAS; Xin Wang, Sweetpotato Research Institute, CAAS; Wei Tang, Sweetpotato Research Institute, CAAS; Hui Yan, Sweetpotato Research Institute, CAAS; Yun-Gang Zhang, Sweetpotato Research Institute, CAAS; Dai-fu Ma, Sweetpotato Research Institute, CAAS

P763
Identification of SNP Variants Among Peanut (Arachis hypogaea L.) Cultivars, and Germplasm Accessions, and Wild Species By Illumina Sequencing
Ratan Chopra, Texas Tech University; Gloria Burow, USDA-ARS; Andrew D. Farmer, National Center for Genome Resources (NCGR); Joann Mudge, National Center for Genome Resources (NCGR); Charles Simpson, Texas AgriLife Research; Thea Wilkins, Texas Tech University; Mark D. Burow, Texas A&M AgriLife Research

P764
Transcriptome Sequencing of Spinacia Germplasm
Chen Jiao, Boyce Thompson Institute for Plant Research, Cornell University; Quanhua Wang, Shanghai Normal University; Yimin Xu, Boyce Thompson Institute for Plant Research; Chenxi Xu, Shanghai Normal University; Chenhui Ge, Shanghai Normal University; Beiquan Mou, USDA-ARS; Zhangjun Fei, Boyce Thompson Institute for Plant Research, Cornell University

P765
Multi-Species SNP Discovery from 240 Eucalyptus Resequenced Genomes: Development and Validation of a Eucalyptus 60,000 SNP Chip, the "EucHIP60k.BR"
Orzenil Bonfim Silva-Junior, Bioinformatics Lab - EMBRAPA Genetic Resources & Biotechnology; Danielle A. Faria, Embrapa Genetic Resources and Biotechnology; Roberto C. Togawa, Embrapa Genetic Resources and Biotechnology; Dario Grattapaglia, Plant Genetics Lab - EMBRAPA Genetic Resources & Biotechnology

P767
Characterization of BoLa I MHC Sequence Missing from the Bovine Reference Genome
Erika D. Downey, Veterinary Integrative Biosciences, Texas A&M University; Jeremy Taylor, Division of Animal Science, University of Missouri; Robert Schnabel, University of Missouri; Loren C. Skow, Veterinary Integrative Biosciences, Texas A&M University

P768
Genome-Wide Genetic Diversity, Population Structure and Admixture Analysis in African and Asian Cattle Breeds
Zewdu Edea Bedada, Chungbuk National University; Kwan-Suk Kim, Chungbuk National University; Md. Shamsul Alam Bhuiyan, Bangladesh Agricultural University; Tadelle Dessie, International Livestock Research Institute

P769
Deriving Gene Networks Underlying Fatty Acid Composition of the Triacylglycerol Lipid Fraction in Angus Longissimus Muscle
Justin W. Buchanan, Oklahoma State University; James Koltes, Department of Animal Science, Iowa State University; James M. Reecy, Iowa State University; Dorian J. Garrick, Department of Animal Science, Iowa State University; Raluca Mateescu, Oklahoma State University

P770
Development of Traceability System for Agu - Okinawan Pig - Using Dense SNP Markers
Hirotoshi Shimabukuro, Okinawa prefectural Livestock Research Center; Shihei Touma, Okinawa prefectural Livestock Research Center; Naohiko Okumura, JATAFF; Aisaku Arakawa, National Institute of Agrobiological Sciences; Hirohide Uenishi, National Institute of Agrobiological Sciences; Satoshi Mikawa, National Institute of Agrobiological Sciences

P771
Investigation of Genomic Structure of Okinawan Pig Population
Shihei Touma, Okinawa prefectural Livestock Research Center; Hirotoshi Shimabukuro, Okinawa prefectural Livestock Research Center; Aisaku Arakawa, National Institute of Agrobiological Sciences; Hirohide Uenishi, National Institute of Agrobiological Sciences; Tomoko Eguchi-Ogawa, National Institute of Agrobiological Sciences; Masaaki Taniguchi, National Institute of Agrobiological Sciences; Naohiko Okumura, JATAFF; Satoshi Mikawa, National Institute of Agrobiological Sciences

P772
Association of Single Nucleotide Polymorphisms in Porcine Candidate Genes with Pig Immune and Meat Quality Traits in a Korean Native Pig × Yorkshire F2 population
Pengxia Niu, Chungbuk National University; Kwan Suk Kim, Chungbuk National University/Animal Science; Sangwook Kim, Chungbuk National University

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