2176Managing Crop Phenotype Data
The final frontier for the application of plant genomics to plant improvement may be the acquisition and analysis of phenotype data for
the multigenic, environment-sensitive traits important for crops grown in the field. High-quality phenotype data remains expensive to produce, but its value is being leveraged by interpreting it in terms of associated genome-wide molecular marker alleles. This workshop will address the current status and plans for phenotype data input, organization, standards, querying, delivery, integration with genotype data, and analysis.
Date: Saturday, January 11, 2014
Time: 10:30 AM-12:40 PM
Room: Pacific Salon 2
Organizers:
Jean-Luc Jannink
and
David E. Matthews
10:30 AM
Information System for Phenotype Data: Trait, Trials and Genotypes Identification and Integration in GnpIS
Cyril Pommier, INRA - URGI;
Michael Alaux, INRA - URGI;
Sophie Durand, INRA - URGI;
Raphael Flores, INRA - URGI;
Aminah Keliet, INRA - URGI;
Erik Kimmel, INRA - URGI;
Célia Michotey, INRA - URGI;
Nacer Mohellibi, INRA - URGI;
Dorothee Valdenaire, INRA URGI;
P. Roumet, AGAP - INRA;
Delphine Steinbach, INRA - URGI;
Hadi Quesneville, INRA - URGI
10:50 AM
On Minimum Reporting Requirements and Standard Formatting of Plant Phenotypic Data
Hanna Cwiek, Institute of Plant Genetics, Polish Academy of Science;
Cyril Pommier, INRA - URGI;
Uwe Scholz, Institute of Plant Genetics and Crop Plant Research (IPK);
Matthias Lange, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben;
Jinbo Chen, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben;
Aalt D.J. van Dijk, Biometris, Wageningen University;
Jan-Peter Nap, Plant Research International, Wageningen University;
Jan van Oeveren, Keygene;
Paul J. Kersey, EMBL - The European Bioinformatics Institute;
Pawel Krajewski, Institute of Plant Genetics PAS
11:10 AM
Building Breeding Database in GDR, Genome Database for Rosaceae
Sook Jung, Washington State University;
Taein Lee, Washington State University;
Stephen P. Ficklin, Washington State University;
Katherine M. Evans, Washington State University;
Cameron Peace, Washington State University;
Dorrie Main, Washington State University
11:30 AM
CassavaBase - A Platform for Next-Generation Breeding
Lukas Mueller, Boyce Thompson Institute for Plant Research;
Naama Menda, Boyce Thompson Institute for Plant Research;
Isaak Y. Tecle, Boyce Thompson Institute for Plant Research;
Jeremy D. Edwards, Boyce Thompson Institute for Plant Research
12:30 PM
The Breeders' Database
David E. Matthews, USDA ARS;
Jean-Luc Jannink, USDA, Cornell University;
Olin Anderson, USDA ARS, Western Regional Research Center
