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New Methods to Constrain Genome Scale Models with Stable Isotope Labeling Data
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Thermodynamics As an Optimization Goal for Metabolism: Prediction of Metabolite Levels, Rate Constants and Post-Translational Regulation
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System-Level Examination of Metabolism in Rhizosphere Grown Burkholderiales
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Thermodynamics As an Optimization Goal for Metabolism: Prediction of Metabolite Levels, Rate Constants and Post-Translational Regulation
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Machine Learning for Uncertainty Reduction in Biochemical Kinetic Models
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Computational Pathway Design for Funneling Lignin Intermediates to Aromatic Products
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Developement and Application of Constraint-Based Modeling Methods to Study Vulnerabilities Associated to Lipid Metabolism in Prostate Cancer
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Identifying Orphan Enzymes in Pseudomonas Putida Using Cobra-Based Methods
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Memote: A Community Driven Effort Towards a Standardized Genome-Scale Metabolic Model Test Suite
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Probabilistic Metabolic Network Reconstruction: A Modular Approach to Integrate Omics Data and Represent Uncertainty
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An Ecology of Modeling Methods, Data, and Tools to Decipher Functional Delegation and Species Interactions within a Microbiome
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Identification and Analysis of Bacterial Genomic Metabolic Signatures in the Department of Energy's Systems Biology Knowledgebase
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Developing and Evaluating Integrated Metabolic Regulatory Models for Microbial Life
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Implementing and Evaluating a Gaussian Mixture Framework for Identifying Gene Function from Tnseq Data
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Utilizing RNA-Seq Data in Bayesian Estimation of Gene Activity States
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Identifying and Targeting Key Cellular Mechanisms for Proliferation in Malaria Parasites: A Combined Experimental and Computational Strategy
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Utilizing RNA-Seq Data in Bayesian Estimation of Gene Activity States
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Modeling of Potentially Virulence-Associated Metabolic Pathways in Pseudomonas Aeruginosa PA14 Including Experimental Verification
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Bayesian Inference of Metabolic Kinetics from Genome-Scale Multiomics Data
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Metabolic Model-Based Evaluation of Microbiome-Metabolome Association Studies
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Model-Based Prediction of Functional SNPs Suggests Factors for Metabolic Diversity and Drug Resistance across Human-Associated Mycobacterium Tuberculosis
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Determination of CHO Biomass Composition
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A Metabolic Reconstruction of Lactobacillus Reuteri and Analysis of Its Potential As a Cell Factory
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Genome-Scale Metabolic Model of Chromochloris, an Emerging Model Organism for Sustainable Fuel Production
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A Metabolic Reconstruction of Lactobacillus Reuteri and Analysis of Its Potential As a Cell Factory
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Systems Approaches to Identify Metabolite Signatures in Placental Development
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A Computational Knowledge-Base Elucidates the Response of Staphylococcus Aureus to Different Media Types
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Expanding Metabolic Models to Three Dimensions
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Constructing a High Quality Genome-Scale Metabolic Network for Streptomyces Lividans TK24
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Identifying and Targeting Key Cellular Mechanisms for Proliferation in Malaria Parasites: A Combined Experimental and Computational Strategy