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Systems Approaches to Identify Metabolite Signatures in Placental Development
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Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models
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Koptic: A Novel Approach for in silico Prediction of Enzyme Kinetics and Regulation
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Miren: An Optimization Tool for Data-Driven Discovery of Global Regulatory Phenomena Used to Elucidate the Heat Stress Response Mechanism in Rice Seed
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Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas Palustris
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An Integrated COBRA-PBPK Model to Study Interactions between the Gut Microbiome and the Brain in Autism
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Etfl: A Formulation of ME-Models Accounting for Expression and Thermodynamics in Constraint-Based Models
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Synthetic Lethality in Cancer Research Via Genetic Minimal Cut Sets
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Yeast-GEM: Reviving the Consensus Genome-Scale Model of S. Cerevisiae As a Standard in the Community
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Miren: An Optimization Tool for Data-Driven Discovery of Global Regulatory Phenomena Used to Elucidate the Heat Stress Response Mechanism in Rice Seed
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Effective Visualization for Investigating Elementary Flux Modes in Genome-Scale Metabolic Models
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Deconvoluting Independent Regulatory Signals in the Escherichia coli Transcriptome
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COBRA.jl - Gearing up for the huge scale
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Identification and Analysis of Bacterial Genomic Metabolic Signatures in the Department of Energy's Systems Biology Knowledgebase
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Model-Based Prediction of Functional SNPs Suggests Factors for Metabolic Diversity and Drug Resistance across Human-Associated Mycobacterium Tuberculosis
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Metabolic Coordination through Metabolite-Protein Interactions
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Understanding the Role of Bile Acids in Alzheimer′s Disease
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Genome-Scale Constraint-Based Metabolic Modeling and Analysis of Cryptoccocus Curvatus
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Characterizing and Ranking Computed Metabolic Engineering Strategies
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COBRA.jl - Gearing up for the huge scale
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Sammi: An Interactive, Semi-Automated Tool for the Illustration and Visualization of Metabolic Networks
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Modeling of Potentially Virulence-Associated Metabolic Pathways in Pseudomonas Aeruginosa PA14 Including Experimental Verification
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Genome-Scale Metabolic Model Embedding for Fed-Batch Optimal Feed Policy Determination
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Probabilistic Metabolic Network Reconstruction: A Modular Approach to Integrate Omics Data and Represent Uncertainty
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A Computational Knowledge-Base Elucidates the Response of Staphylococcus Aureus to Different Media Types
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Probabilistic Metabolic Network Reconstruction: A Modular Approach to Integrate Omics Data and Represent Uncertainty
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Modeling Physiological Responses to Stress: Metabolism of Fasting and Acetaminophen-Induced Liver Damage in the Laboratory Rat
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An Integrated COBRA-PBPK Model to Study Interactions between the Gut Microbiome and the Brain in Autism
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Constructing a High Quality Genome-Scale Metabolic Network for Streptomyces Lividans TK24
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Template of Metabolic Reprogramming in Cancer and Healthy Cells for Inferring Oncogenes
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Describing the Glucose-Lactate Consumption Rate during Expansion and Osteogenic Differentiation of Human Bone Marrow Derived Mesenchymal Stem Cells: A Premise for Building a Systems Biology Model of Osteogenesis Using Metabolomics Analysis
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Describing the Glucose-Lactate Consumption Rate during Expansion and Osteogenic Differentiation of Human Bone Marrow Derived Mesenchymal Stem Cells: A Premise for Building a Systems Biology Model of Osteogenesis Using Metabolomics Analysis
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Constructing a High Quality Genome-Scale Metabolic Network for Streptomyces Lividans TK24
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An Ecology of Modeling Methods, Data, and Tools to Decipher Functional Delegation and Species Interactions within a Microbiome
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DD-Decaf: Data-Driven Design of Cell Factories and Communities
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Cobrapy: A Solid Foundation for a Diverse Python Metabolic Modeling Community
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Elementary Mass Action Stoichiometric Simulation Models Predict Non-Negligible Concentrations of Enzyme-Bound Metabolites
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Memote: A Community Driven Effort Towards a Standardized Genome-Scale Metabolic Model Test Suite
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Utilizing RNA-Seq Data in Bayesian Estimation of Gene Activity States
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Experimental Design for Parameter Estimation in Kinetic Models of Metabolism
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System-Level Examination of Metabolism in Rhizosphere Grown Burkholderiales
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Cobrapy: A Solid Foundation for a Diverse Python Metabolic Modeling Community
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Model-Based Prediction of Functional SNPs Suggests Factors for Metabolic Diversity and Drug Resistance across Human-Associated Mycobacterium Tuberculosis
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Comparative Genomics and Network Modeling of Parasites
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Bayesian Inference of Metabolic Kinetics from Genome-Scale Multiomics Data
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Genome-Scale Constraint-Based Metabolic Modeling and Analysis of Cryptoccocus Curvatus
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Dynamic FBA with Time-Course Transcriptomics
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Toward a Whole-Cell Model of Human Embryonic Stem Cells: A Composable Model of Metabolism Built on a Scalable Framework for Integrating Multiple Pathway Submodels
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Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota
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Determination of CHO Biomass Composition
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Deconvoluting Independent Regulatory Signals in the Escherichia coli Transcriptome