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Improving High Throughput Genome-Scale Metabolic Model Reconstruction and Validation with Tnseq Data Using Modelseed 2
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Automated Reconstruction, Evaluation and Comparison of Diverse Genome Scale Fungal Models
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An Ecology of Modeling Methods, Data, and Tools to Decipher Functional Delegation and Species Interactions within a Microbiome
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Sbmltools: A Sbml Integration Tool for Kbase
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A Deep Dive into False Positive Gene Essentiality Predictions with Modeling and Multi-Omics Analysis
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Towards a Genome-Wide Transport Systems Encoding Genes Tracker
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Compass: FBA-Powered Modeling of Single-Cell RNA-Seq Characterizes Cell-to-Cell Metabolic Heterogeneity and Reveals Novel Therapeutic Targets in Autoimmunity
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System-Level Examination of Metabolism in Rhizosphere Grown Burkholderiales
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Mgpipe: A Toolbox for Investigating Metagenomics Data through Personalized Microbiota Metabolic Models
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COBRA.jl - Gearing up for the huge scale
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Creation and Analysis of Biochemical Constraint-Based Models: The Cobra Toolbox v3.0
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Constraint-Based Modeling Reveals the Distinct Metabolic Potential in Gut Microbiomes of Inflammatory Bowel Disease Patients with Dysbiosis
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Developing and Evaluating Integrated Metabolic Regulatory Models for Microbial Life
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MLProScape: Machine Learning (ML) Based Method for Engineering Enzymes Faster By Modeling Protein Fitness Landscape (ProScape)
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Developing and Evaluating Integrated Metabolic Regulatory Models for Microbial Life
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Understanding the Role of Bile Acids in Alzheimer′s Disease