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A Distance Measure for Heterogeneity Using Genome Scale Metabolic Networks
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Modelling of Cell Metabolism to Reduce the Lactate Generation in CHO Cell Cultures
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Automated Reconstruction, Evaluation and Comparison of Diverse Genome Scale Fungal Models
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Cobrapy: A Solid Foundation for a Diverse Python Metabolic Modeling Community
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Developement and Application of Constraint-Based Modeling Methods to Study Vulnerabilities Associated to Lipid Metabolism in Prostate Cancer
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Metabolic Network Reconstruction of Treponema Pallidum Spp. Pallidum
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The genetic basis for adaptation of model-designed syntrophic co-cultures
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Bridging the Gap between Structural Systems Biology and Constraint-Based Modeling: Tools for Defining the Functional Structural Proteome and Extracting Genome-Scale Structural Information for Metabolic and Macromolecular Expression Models
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Metabolic Analysis of Nitrogen Fixation in the Soybean Micro-Symbiont Sinorhizobium Fredii Using Constraint-Based Modeling
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Scalable Tools for Analyzing Steady-State Microbial Communities Using Standardized Genome-Scale Metabolic Models
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Template of Metabolic Reprogramming in Cancer and Healthy Cells for Inferring Oncogenes
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Incorporation of Dynamic pH into an Integrative Model of a Nitrification Microcosm Co-Culture of Nitrosomonas Europaea and Nitrobacter Winogradskyi
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Implementing and Evaluating a Gaussian Mixture Framework for Identifying Gene Function from Tnseq Data
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Laboratory Evolution Reveals a Two-Dimensional Rate-Yield Tradeoff in Microbial Metabolism
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Toward a Whole-Cell Model of Human Embryonic Stem Cells: A Composable Model of Metabolism Built on a Scalable Framework for Integrating Multiple Pathway Submodels
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Identifying and Targeting Key Cellular Mechanisms for Proliferation in Malaria Parasites: A Combined Experimental and Computational Strategy
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Metabolic Model-Based Evaluation of Microbiome-Metabolome Association Studies
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An Ecology of Modeling Methods, Data, and Tools to Decipher Functional Delegation and Species Interactions within a Microbiome
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Deconvoluting Independent Regulatory Signals in the Escherichia coli Transcriptome
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Experimental Design for Parameter Estimation in Kinetic Models of Metabolism
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Modelling of Cell Metabolism to Reduce the Lactate Generation in CHO Cell Cultures
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Metabolic Analysis of Nitrogen Fixation in the Soybean Micro-Symbiont Sinorhizobium Fredii Using Constraint-Based Modeling
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Metabolic Network Reconstruction for the Pan-Genome: A Scalable Method to Get High-Quality Metabolic Models across the Tree of Life
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An Ecology of Modeling Methods, Data, and Tools to Decipher Functional Delegation and Species Interactions within a Microbiome
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Reconciling Barseq Datasets for Z. Mobilis Using a Genome-Scale Metabolic Model
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Developing and Evaluating Integrated Metabolic Regulatory Models for Microbial Life
