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Genome-Scale Flux Elucidation in the Fast-Growing Cyanobacterium Synechococcus Elongatus Utex 2973
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Deconvoluting Independent Regulatory Signals in the Escherichia coli Transcriptome
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The genetic basis for adaptation of model-designed syntrophic co-cultures
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Bridging the Gap between Structural Systems Biology and Constraint-Based Modeling: Tools for Defining the Functional Structural Proteome and Extracting Genome-Scale Structural Information for Metabolic and Macromolecular Expression Models
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Erythrodb: A Multi-Omic Visual Knowledge Base for the Human Red Blood Cell
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Toward a Proteome-Complete Model of the Human Red Blood Cell
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A Computational Knowledge-Base Elucidates the Response of Staphylococcus Aureus to Different Media Types
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New Directions for Cobra
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An Integrated COBRA-PBPK Model to Study Interactions between the Gut Microbiome and the Brain in Autism
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Identifying and Targeting Key Cellular Mechanisms for Proliferation in Malaria Parasites: A Combined Experimental and Computational Strategy
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Differential Metabolic Functionality in Antibiotic-Resistant Pseudomonas aeruginosa Revealed with an Integrated Computational and Experimental Approach
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Comparative Genomics and Network Modeling of Parasites
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Genome Scale Metabolic Analysis of the Lactobacillus Genus with a Focus on Probiotic Strains
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Medusa: A Software Package for Construction and Analysis of Ensembles of Metabolic Networks
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Models Constrained with Transcriptomics or Proteomics Data Generate Discordant Predictions
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Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota
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Leveraging a Clostridium Difficile Genre and Metagenomics to Identify Candidate Probiotic Bacterial Strains
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Predicting Shifts in Cardiomyocyte Metabolism during Heart Failure
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Developement and Application of Constraint-Based Modeling Methods to Study Vulnerabilities Associated to Lipid Metabolism in Prostate Cancer
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Systems Approaches to Identify Metabolite Signatures in Placental Development
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Kinetic Model of Clostridium Beijerinckii Based on Phenotypic States Superposition
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System-Level Examination of Metabolism in Rhizosphere Grown Burkholderiales
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Incorporating Flux Sampling into a Minimal Assumption Dynamic Flux Balance Analysis Algorithm
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Genome-Scale Constraint-Based Metabolic Modeling and Analysis of Cryptoccocus Curvatus
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Identifying Orphan Enzymes in Pseudomonas Putida Using Cobra-Based Methods
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Exploring the Metabolic Role of Multidrug-Resistance Efflux Pumps in Salmonella Typhimurium
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Metabolic Modeling of a Model Diatom
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A Computational Knowledge-Base Elucidates the Response of Staphylococcus Aureus to Different Media Types
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Enzyme Multicollinearity in Genome-Scale Metabolic Models Revealed By an Efficient Coupling Algorithm
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Model-Guided Engineering of Cyanobacteria for Improved Biofuel Production
