36Bioinformatics: Software
Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Plant Resources at the DOE KBase Project
Samuel M. D. Seaver, Argonne National Laboratory;
Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS;
Sergei Maslov, Brookhaven National Laboratory;
Shinjae Yoo, Brookhaven National Laboratory;
Dantong Yu, Brookhaven National Laboratory;
Michael Schatz, Cold Spring Harbor Laboratory;
James Gurtowski, Cold Spring Harbor Laboratory;
Sunita Kumari, Cold Spring Harbor Laboratory;
Shiran Pasternak, Cold Spring Harbor Lab;
Jim Thomason, Cold Spring Harbor Laboratory;
Mark Gerstein, Yale University;
Gang Fang, Yale University;
Darryl Reeves, Yale University;
Pamela Ronald, Joint BioEnergy Institute (JBEI);
TaeYun Oh, University of California, Davis;
Christopher Henry, Argonne National Laboratory;
Dave Weston, Oak Ridge National Laboratory;
Priya Ranjan, Oak Ridge National Laboratory;
Mustafa Syed, Oak Ridge National Laboratory;
Miriam Land, Oak Ridge National Laboratory;
Adam Arkin, Lawrence Berkeley National Laboratory
GMOD in the Cloud and GMOD in a Box
Scott Cain, Ontario Institute for Cancer Research;
Robert Buels, Boyce Thompson Institute for Plant Research;
Stephen P. Ficklin, Washington State University;
Ed Lee, Lawrence Berkeley National Laboratory;
Lacey-Anne Sanderson, University of Saskatchewan;
Amelia Ireland, University of California, Berkeley;
Lincoln Stein, Ontario Institute of Cancer Research
Crop> pedia
Jesse Munkvold, Keygene Inc.;
Rudi van Bavel, Keygene;
Lian Perebolte, Keygene;
Evert-Jan Blom, Keygene;
Mark van Haaren, Keygene;
Uwe Thissen, KeyGene
ORCAE: Online Resource for Community Annotation of Eukaryotes
Lieven Sterck, VIB Ghent University;
Thomas Abeel, VIB Ghent University;
Stephane Rombauts, VIB Department of Plant Systems Biology, Ghent University;
Yao-Cheng Lin, VIB Department of Plant Systems Biology, Ghent University;
Pierre Rouzé, VIB Ghent University, Department of Plant Biotechnology and Bioinformatics;
Yves Van de Peer, VIB - Ghent University
PlantGenIE - the Plant Genome Integrative Explorer
David Sundell, Umeå Plant Science Center;
Sergiu Netotea, Umeå Plant Science Centre, Umeå University;
Chanaka Mannapperuma, Umeå Plant Science Centre, Umeå University;
Nicolas Delhomme, Umeå Plant Science Center, Umeå University;
Torgeir R. Hvidsten, Norwegian University of Life Sciences;
Nathaniel R. Street, Umeå Plant Science Center, Umeå University
Improving Genomes Using Long Reads and PBJelly 2
Kim C. Worley, Baylor College of Medicine;
Adam C. English, Baylor College of Medicine;
Stephen Richards, Baylor College of Medicine;
Jeffrey Ross-Ibarra, Baylor College of Medicine;
Yi Han, Baylor College of Medicine;
Daniel Hughes, Baylor College of Medicine;
David Rio Deiros, Baylor College of Medicine;
Vanessa Vee, Baylor College of Medicine;
Min Wang, Baylor College of Medicine;
Eric Boerwinkle, University of Texas Health Science Center;
Donna M. Muzny, Baylor College of Medicine;
Jeffrey G. Reid, Baylor College of Medicine;
Richard A. Gibbs, Baylor College of Medicine
A GUI Application "CA Plot Viewer" for Large-Scale Gene Expression Analysis with Next-Generation Sequencing Technology
Kentaro Yano, School of Agri., Meiji University;
Tomoyuki Takano, School of Agri., Meiji University;
Shin Terashima, School of Agri., Meiji University;
Hayato Matsumura, School of Agri., Meiji University;
Maasa Kanno, School of Agri., Meiji University;
Kyoko Morimoto, School of Agri., Meiji University;
Koji Yokoyama, School of Agri., Meiji University;
Yuuki Yoshida, School of Agri., Meiji University;
Yoshifumi Tada, TOHOKU CHEMICAL CO., LTD.;
Hiroshi Chiba, TOHOKU CHEMICAL CO., LTD.;
Hajime Ohyanagi, School of Agri., Meiji University;
Masaaki Kobayashi, School of Agri., Meiji University
Graphical Applications for Visualization and Analysis of Genotype Data Sets
Iain Milne, The James Hutton Institute;
Gordon Stephen, The James Hutton Institute;
Micha Bayer, The James Hutton Institute;
Paul Shaw, The James Hutton Institute;
Sebastian Raubach, The James Hutton Institute;
Sarah Hearne, CIMMYT;
Sukhwinder Singh, CIMMYT- International Maize and Wheat Improvement Centre;
Peter Wenzl, CIMMYT - International Maize and Wheat Improvement Centre;
David Marshall, The James Hutton Institute
Oligoreef - Generation of Primers for Complex Polymerase Chain Reactions
Petra Kellers, Max Planck Institute for Biophysical Chemistry;
Åsa Söderberg, Uppsala University, Section of Chemistry;
Peter Lindblad, Uppsala University, Section of Chemistry;
Dirk-Jan de Koning, Swedish University of Agricultural Sciences;
Fernando Lopes Pinto, Swedish University of Agricultural Sciences
Detecting Small Plant Peptides Using Spada (Small Peptide Alignment Discovery Application)
Peng Zhou, Department of Plant Pathology, University of Minnesota;
Kevin AT Silverstein, Supercomputing Institute, University of Minnesota;
Liangliang Gao, Department of Plant Pathology, University of Minnesota;
Jonathan Walton, Michigan State University;
Sumitha Nallu, Dept. of Ecology and Evolution, University of Chicago;
Joseph Guhlin, Department of Plant Pathology, University of Minnesota;
Nevin Young, Department of Plant Pathology, University of Minnesota
Comparison of Variant Calling Pipelines for Whole Genome Sequencing Data in Dairy Cattle
Christine F. Baes, Bern University of Applied Sciences;
Marlies A. Dolezal, Università degli Studi di Milano;
Eric Fritz-Waters, Department of Animal Science, Iowa State University;
James Koltes, Department of Animal Science, Iowa State University;
Beat Bapst, Qualitas AG;
Christine Flury, Bern University of Applied Sciences;
Heidi Signer-Hasler, Bern University of Applied Sciences;
Christian Stricker, agn-genetics;
Rohan L. Fernando, Iowa State University;
James M. Reecy, Iowa State University;
Dorian J. Garrick, Department of Animal Science, Iowa State University;
Fritz Schmitz-Hsu, swissgenetics;
Ruedi Fries, Chair of Animal Breeding - Technische Universität München;
Birgit Gredler, Qualitas AG
Using LTC Software Package for Wheat Physical Mapping: Increasing Contig Lengths and MTP Quality
Zeev M. Frenkel, Institute of Evolution, University of Haifa;
Vladimir A. Glikson, MultiQTL Ltd.;
Dina Raats, Institute of Evolution, University of Haifa;
Bujie Zhan, Norwegian University of Life Sciences;
Tatiana Belova, Norwegian University of Life Sciences;
Etienne Paux, INRA GDEC;
Tzion Fahima, Institute of Evolution, University of Haifa;
Catherine Feuillet, INRA GDEC;
Odd-Arne Olsen, Hedmark University College;
Simen Rød Sandve, Norwegian University of Life Sciences;
Abraham B. Korol, Institute of Evolution, University of Haifa
