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Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans

Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Integration of Transcriptomic and Metabolomic Strategies to Dissect Soybean Flavonoid Biosynthetic Network for Facilitating Metabolic Engineering of Soybean Nutrients
Jian Zhao, Huazhong Agricultural University; Jing Wang, Huazhong Agricultural University; Penghui Li, Huazhong Agricultural University; Gaoyang Zhang, Huazhong Agricultural University

Medicago truncatula Genome Release Version 4
Vivek Krishnakumar, J. Craig Venter Institute; Haibao Tang, J. Craig Venter Institute; Shelby Bidwell, J. Craig Venter Institute; Benjamin Rosen, J. Craig Venter Institute; Shiguo Zhou, University of Wisconsin-Madison; David Schwartz, University of Wisconsin-Madison; Agnes Chan, J. Craig Venter Institute; Chris Town, J. Craig Venter Institute

Regulation of Medicago truncatula GH3 Genes Expression by Auxin and Macrophomina phaseolina Infection
Bin Shuai, Wichita State University; Karmen Mah, Wichita State University

Development and Use of a High Density SNP Array to Evaluate Genetic Diversity in Alfalfa
Xuehui Li, The Samuel Roberts Noble Foundation; Yuanhong Han, The Samuel Roberts Noble Foundation; Yanling Wei, The Samuel Roberts Noble Foundation; Ananta Raj Acharya, University of Georgia; Andrew Farmer, National Center for Genome Resources; Julie Ho, Forage Genetics International; Maria Monteros, The Samuel Roberts Noble Foundation; Charlie Brummer, The Samuel Roberts Noble Foundation

Rapid Evolution of Tandemly Duplicated Genes in Legume Genomes
Yang Jae Kang, Seoul National University; Suk-Ha Lee, Seoul National University

Selection of a Core Set of Cultivated and Wild Soybean Germplasm based on the SoySNP50K Illumina Beadchip Assay
Qijian Song, USDA-ARS, Soybean Genomics and Improvement Lab; Gaofeng Jia, USDA-ARS, Soybean Genomics and Improvement Lab; Charles Quigley, USDA-ARS, Soybean Genomics and Improvement Lab; Edward Fickus, USDA-ARS, Soybean Genomics and Improvement Lab; Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab

Population Structure and Linkage Disequilibrium in Elite Soybean Breeding Germplasm from Minnesota
Yong Bao, Department of Ag Plant Genetics, University of Minnesota; Roxanne Denny, Department of Plant Pathology, University of Minnesota; Jim Orf, Department of Ag Plant Genetics, University of Minnesota; Nevin Young, Department of Plant Pathology, University of Minnesota

Genome Wide Locus Interactions Underlie Crop Improvement In Soybeans
David A. Lightfoot, Southern Illinois University; Pavan Kasarla, SIUC; Naresh Pola, SIUC

Target Sequencing of Japanese Soybean (Glycine max) Cultivars by Sequence Capture
Yuichi Katayose, National Institute of Agrobiological Sciences; Hiroyuki Kanamori, National Institute of Agrobiological Sciences; Kanako Kurita, National Institute of Agrobiological Sciences; Michie Shibata, National Institute of Agrobiological Sciences; Akito Kaga, National Institute of Agrobiological Sciences; Sayumi Takeshita, Mitsubishi Space Software Co., Ltd.; Hajime Ohyanagi, Mitsubishi Space Software Co., Ltd.; Hiroshi Ikawa, Mitsubishi Space Software Co.,Ltd.; Nobukazu Namiki, Mitsubishi Space Software Co.,Ltd.; Michihiko Shimomura, Mitsubishi Space Software Co., Ltd.; Jianzhong Wu, National Institute of Agrobiological Sciences

Methylation of the SIRE1 Retroelement in Glycine max
Howard M. Laten, Loyola University Chicago

Identification of a Candidate Male-fertility Female-fertility Gene Tagged by an Endogenous Transposon in Soybean
Jordan Baumbach, Iowa State University; Alexandrea Ollhoff, University of Wisconsin Stevens Point; Callie Jean Johnson, University of Wisconsin-Stevens Point; Jaydeep Raval, University of Wisconsin Stevens Point; Ramesh Pudake, Iowa State University; Reid Palmer, Iowa State University; Madan K. Bhattacharyya, Iowa State University; Devinder Sandhu, University of Wisconsin-Stevens Point

Transposition of an Endogenous Transposable Element in Soybean
Callie Jean Johnson, University of Wisconsin-Stevens Point; Alexandrea Ollhoff, University of Wisconsin Stevens Point; Reid Palmer, Iowa State University; Madan K. Bhattacharyya, Iowa State University; Devinder Sandhu, University of Wisconsin-Stevens Point

Rapid Identification of Known Alleles and Discovery of Novel Alleles at the Soybean E3 Locus via Genotyping-by-Sequencing
Aurélie Tardivel, Université Laval; Humira Sonah, Université Laval; Francois Belzile, Université Laval; Louise S. O'Donoughue, CÉROM, Centre de recherche sur les grains inc.

Using SoyBase Tools to Identify Genes Potentially Involved in Quantitative Traits: the Soybean bZIP1 Transcription Factor and Water Use Efficiency
Rex T. Nelson, USDA-ARS-CICGRU; David Grant, USDA-ARS-CICGRU and Iowa State University; Steven B. Cannon, USDA-ARS-CICGRU; Nathan Weeks, USDA-ARS-CICGRU; Kevin H. Feeley, USDA-ARS-CICGRU; Robert Baker, USDA-ARS-CICGRU; Randy C. Shoemaker, USDA-ARS-CICGRU

Fine Mapping of Novel Flowering Time QTLs in Soybean
Satoshi Watanabe, National Institute of Agrobiological Sciences; Takehiko Shimizu, National Institute of Agrobiological Sciences; Kayo Machita, National Institute of Agrobiological Sciences; Kunihiko Komatsu, NARO Hokkaido Agricultural Research Center; Masao Ishimoto, National Institute of Agrobiological Sciences; Toyoaki Anai, Saga University; Akito Kaga, National Institute of Agrobiological Sciences

A Genome-Wide Association Study to Identify Loci Associated with Seed Protein Concentration in Soybean
Eun-Young Hwang, University of Maryland; Qijian Song, USDA-ARS, Soybean Genomics and Improvement Lab; Gaofeng Jia, USDA-ARS, Soybean Genomics and Improvement Lab; James E. Specht, University of Nebraska; David L. Hyten, Pioneer Hi-Bred International, Inc.; Jose Costa, University of Maryland; Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab

Quantitative Trait Loci for Moisture, Protein, and Oil Content in Soybean [Glycine max (L.) Merr.]
Masum Akond, Fayetteville State University; Bobby A. Ragin, Fayetteville State University; Richard Bazzelle, Fayetteville State University; Stella Kantartzi, Southern Illinois University; Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC; Abdelmajid Kassem, Fayetteville State University

Selective Genotyping to Identify Soybean Seed Protein/Oil QTLs in 48 High Protein Germplasm Accessions
Piyaporn Phansak, University of Nebraska; Watcharin Soonsuwan, University of Nebraska; David L. Hyten, Pioneer Hi-Bred International, Inc.; Qijian Song, USDA-ARS, Soybean Genomics and Improvement Lab; Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab; James E. Specht, University of Nebraska

Association Analysis of Fatty Acid Content in Soybeans Accessions
Regina H.G. Priolli, ESALQ - University of São Paulo; José Baldin Pinheiro, ESALQ, University of São Paulo; Jaqueline B. Campos, ESALQ - University of São Paulo; Natal A. Vello, ESALQ - University of São Paulo

Quantitative Trait Loci (QTL) for Seed Isofalvones Contents Mapped in the PI 438489B by ‘Hamilton' Recombinant Inbred Line Population of Soybean [Glycine max (L.) Merr.]
Richard Bazzelle, Fayetteville State University; Bobby A. Ragin, Fayetteville State University; Stella Kantartzi, Southern Illinois University; Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC; Masum Akond, Fayetteville State University; Abdelmajid Kassem, Fayetteville State University

Transcriptome Profiling of a Defective Seed Coat Mutation in Soybean
Anupreet Kour, University of Illinois, Urbana-Champaign; Anne M. Boone, University of Illinois, Urbana-Champaign; Lila Vodkin, University of Illinois

Association Mapping of Iron Deficiency Chlorosis (IDC) In Glycine max
Sujan Mamidi, Dept of Plant Sciences, North Dakota State University; Jay R Goos, Dept. of Soil Science, North Dakota State University; Rian Lee, Dept of Plant Sciences, North Dakota State University; Phillip McClean, Dept of Plant Sciences, North Dakota State University

Identification of Quantitative Trait Loci for Resistance to Sudden Death Syndrome in a Recombinant Inbred Population of Soybean (Glycine max (L.) Merr.)
James Anderson, Department of Plant Soil and Agricultural Systems, SIUC; M Humberto Reyes-Valdes, Universidad Autónoma Agraria Antonio Narro; Jiazheng Yuan, Michigan State University; Dechun Wang, Michigan State University; Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC; Stella Kantartzi, Southern Illinois University

A Soybean Cyst Nematode Resistance Gene Points to a New Mechanism of Plant Resistance to Pathogens
Shiming Liu, Department of Plant Soil and Agricultural Systems, SIUC; Pramod K. Kandoth, University of Missouri; Samantha D. Warren, University of Missouri; Greg Yeckel, University of Missouri; Robert Heinz, University of Missouri; John Alden, University of Missouri; Chunling Yang, Iowa State University; Aziz Jamai, Southern Illinois University; Tarik El-Mellouki, Southern Illinois University; Parijat S. Juvale, Iowa State University; John Hill, Iowa State University; Thomas J. Baum, Iowa State University; Silvia Cianzio, Iowa State University; Steven A. Whitham, Iowa State University; Dmitry Korkin, University of Missouri; Melissa G. Mitchum, University of Missouri; Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC

Phylogenomic Expression Analysis of Flooding Stress Marker Gene Families in Soybean Roots Under Hypoxia
Thiago J. Nakayama, Federal University of Viçosa; Norman Neumaier, Embrapa Soybean; Leandro Costa Nascimento, State University of Campinas; Marcelo Falsarella Carazzolle, State University of Campinas; Beatriz M. Emygdio, Embrapa Temperate Agriculture; Ana Claudia B. de Oliveira, Embrapa Temperate Agriculture; Aluízio Borém, Federal University of Viçosa; Alexandre Nepomuceno, Embrapa Soybean

RNA-Seq Identifies Genes and Processes that are Differentially Expressed in Soybean Due to Weed Stress
David Horvath, USDA-ARS; Stephanie Hansen, South Dakota State University; Sharon Clay, South Dakota State University; Brian Scheffler, USDA-ARS-MSA

Row Spaces can affect Agronomic Traits in Soybean [Glycine max (L.) Merr.]
Masum Akond, Fayetteville State University; Bobby A. Ragin, Fayetteville State University; Willsheana L Clark, Fayetteville State University; Stella Kantartzi, Southern Illinois University; Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC; Abdelmajid Kassem, Fayetteville State University

Gene Expression Atlas for Common Bean
Jamie A O'Rourke, USDA-ARS, University of Minnesota; Luis P. Iniguez, Centro de Ciencias Genomicas, UNAM; Bruna Bucciarelli, USDA-ARS, University of Minnesota; Sue Miller, USDA-ARS, University of Minnesota; Phillip McClean, Dept of Plant Sciences, North Dakota State University; Scott Jackson, University of Georgia; Randy C. Shoemaker, USDA-ARS-CICGRU; Georgina Hernandez, Centro de Ciencias Genomicas, UNAM; Carroll P. Vance, USDA-ARS, University of Minnesota

Development of a High Density SNP-Based Linkage Map of Phaseolus vulgaris using the Genotyping-by-Sequencing Approach
Mehul Bhakta, Dept. Horticultural Sciences, University of Florida; Carlos Eduardo Vallejos, University of Florida; Jose Clavijo, Agronomy Department, University of Florida; Li Zhang, Dept. Agri and Biol Engg, University of Florida; Raveendra Patil, Dept. Agri and Biol Engg, University of Florida; Salvador Gezan, University of Florida; Kenneth Boote, Agronomy Department, University of Florida; James Jones, Dept. Agri and Biol Engg, University of Florida; Melanie Correll, Dept. Agri and Biol Engg, University of Florida; J Ricaurte, CIAT-International Center for Tropical Agriculture; Martin Otero, International Center for Tropical Agriculture; I Rao, CIAT-International Center for Tropical Agriculture; Stephen E. Beebe, CIAT-International Center for Tropical Agriculture; Elvin Roman-Paoli, University of Puerto Rico; A Gonzalez, University of Puerto Rico; James Beaver, University of Puerto Rico; Raphael Colbert, Plant Sciences - North Dakota State University; Juan M. Osorno, Dept of Plant Sciences, North Dakota State University

Genome Wide Association Study of Agronomic Traits in Common Bean (Phaseolus vulgaris L.)
Samira Mafi Moghaddam, Dept of Plant Sciences, North Dakota State University; Sujan Mamidi, Dept of Plant Sciences, North Dakota State University; Mark A. Brick, Dept of Soil and Crop Sciences,Colorado State University; Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab; James D. Kelly, Michigan State University; Phillip Miklas, USDA-ARS; Juan M. Osorno, Dept of Plant Sciences, North Dakota State University; Timothy Porch, USDA-ARS,Tropical Agriculture Research Station; Qijian Song, USDA-ARS, Soybean Genomics and Improvement Lab; Carlos Urrea, University of Nebraska; Phillip McClean, Dept of Plant Sciences, North Dakota State University

Analyses of Histone Deacetylases During Rust Fungal Inoculation in Common Bean (Phaseolus vulgaris L.)
Kalpalatha Melmaiee, Delaware State University; Adrianne Brown, Delaware State University; Vasudevan Ayyappan, Delaware State University; Venu Kalavacharla, Delaware State University

Chromatin Immunoprecipitation-Sequencing (ChIP-Seq) to Understand Genome-Wide Hierarchy of H4K12ac and H3K9me2 acquisition in Common Bean (Phaseolus vulgaris L.) and mung bean (Vigna mungo L.)
Vasudevan Ayyappan, Delaware State University; Asoke Talukder, Geschickten Biosciences; Krittika Sasmal, Geschickten Biosciences; Sumana Srivatsa, Geschickten Biosciences; Kalpalatha Melmaiee, Delaware State University; Prahalad. H. Achutharao, Geschickten Biosciences; Bruce Kingham, University of Delaware-DBI; Zhanji Liu, Shandong Academy of Ag Sciences; Venu Kalavacharla, Delaware State University

Characterization of Drought Tolerance of the Chinese Asparagus Bean Mini-Core and Transcriptional Profiling of Cultivars Representing Different Drought Tolerance Types
Pei Xu, Zhejiang Academy of Agricultural Sciences; Xiaohua Wu, Zhejiang Academy of Agricultural Sciences; Baogen Wang, Zhejiang Academy of Agricultural Sciences; Zhongfu Lu, Zhejiang Academy of Agricultural Sciences; Sha Wang, Zhejiang Academy of Agricultural Sciences; Guojing Li, Zhejiang Academy of Agricultural Sciences

A Genetic Linkage Map Based on NBS Profiling Markers in Lentil
Hulya Yilmaz Temel, Ege University; Abdullah Kahraman, Harran University; M. Bahattin Tanyolac, Ege University

Single Nucleotide Polymorphism (SNP) Discovery in Lentil Using Illumina Platform
Hulya Yilmaz Temel, Ege University; Deniz Gol, Ege University; Abdullah Kahraman, Harran University; M. Bahattin Tanyolac, Ege University

Development and Mapping New Microsatellite Markers in Lentil
Hakan Ozkan, University of Cukurova; Enver Ersoy Andeden, University of Cukurova; Abdullah Kahriman, Harran University; Duygu Ates, Ege University; Tugce Sever, Ege University; Secil Bayar, Ege University; M. Bahattin Tanyolac, Ege University

Development of SSR Markers in Lentil
Enver Ersoy Andeden, University of Cukurova; Muazzez Derya, University of Cukurova; Faheem S. Baloch, University of Cukurova; Benjamin Kilian, IPK; Hakan Ozkan, University of Cukurova

Genetic Diversity and Relationship Among Wild Annual Lens Species Using iPBS-Retrotransposons Markers
Muazzez Derya, University of Cukurova; Enver Ersoy Andeden, University of Cukurova; Faheem S. Baloch, University of Cukurova; Benjamin Kilian, IPK; Hakan Ozkan, University of Cukurova

Introgression and Gene Expression Differences Responsible for MYMV Resistance in Mungbean (Vigna radiata L. Wilzek), Ricebean [Vigna umbellata (Thunb.) and its Interspecific Hybrids
Pothiraj Nagarajan, Tamil Nadu Agricultural University; Nawkar Ganesh Mahadeo, Tamil Nadu Agricultural University; Rajagopal Chitra, Tamil Nadu Agricultural University; Kalaimughilan Kalaiponmani, Tamil Nadu Agricultural University

Quantitative Trait Loci for Disease and Insect Pest Resistance and Grain Quality in Mungbean (Vigna radiata (L.) Wilczek)
H.M. Chen, AVRDC - The World Vegetable Center; P.Y. Lin, AVRDC - The World Vegetable Center; R.M. Nair, AVRDC - The World Vegetable Center South Asia; Roland Schafleitner, AVRDC - The World Vegetable Center

Development of a Functional SNP Map for Pea and Identification of Markers Linked to Important Agronomic Traits
Anoop Sindhu, University of Saskatchewan; Marwan Marwan, University of Saskatchewan; Kirstin Bett, University of Saskatchewan; Bunyamin Taran, University of Saskatchewan; Andrew G. Sharpe, National Research Council; Larissa D. Ramsay, National Research Council Canada; Tom Warkentin, University of Saskatchewan

Development of Novel Markers Associated with Pea Enation Mosaic Virus Resistance on LG III of Pea Based on Comparative Mapping
Kevin McPhee, North Dakota State University; Shalu Jain, North Dakota State University; Norman Weeden, Montana State University; Lyndon Porter, USDA-ARS; Sanford Eigenbrode, University of Idaho

QTLs and Comparative Genomics Highlight Candidate Genes for Important Cowpea Traits
Mitchell R. Lucas, University of California; Bao Lam Huynh, University of California; Steve Wanamaker, University of California - Riverside; Jeffrey Ehlers, University of California Riverside; Philip Roberts, University of California Riverside; Timothy J. Close, University of California Riverside

Modern Breeding of Cowpea (Vigna unguiculata L. Walp.) in sub-Saharan Africa
Bao Lam Huynh, University of California; Jeffrey D. Ehlers, University of California - Riverside; Timothy J. Close, University of California; Issa Drabo, Institut de l'Environnement et de Recherches Agricoles; Tignegre Jean-Baptiste De La Salle, Institut de l'Environnement et de Recherches Agricoles; Ousmane Boukar, International Institute of Tropical Agriculture; Christian Fatokun, International Institute of Tropical Agriculture; Ndiaga Cissé, Institut Sénégalais de Recherches Agricoles; Rogerio Chiulele, Eduardo Mondlane University; Batieno T. Benoît Joseph, West African centre for Crop Improvement; Steve Wanamaker, University of California - Riverside; Mitchell R. Lucas, University of California; Arsenio Daniel Ndeve, University of California - Riverside; Jose Rodriguez, University of California - Riverside; Israel Flores, University of California - Riverside; Ndeye Ndack Diop, Generation Challenge Programme, c/o CIMMYT; Xavier Delannay, Generation Challenge Programme, c/o CIMMYT; Philip A. Roberts, University of California - Riverside

Sequencing-Powered QTL Analysis, Association Mapping and Reverse Genetics in the Legume Lotus japonicus
Dorian F. Urbanski, Aarhus University; Haojie Jin, Aarhus University; Karl Nordström, Max Planck Institute for Plant Breeding Research; Anna Malolepszy, Aarhus University; Jonas Klasen, Max Planck Institute for Plant Breeding Research; Yasuyuki Kawaharada, Aarhus University; Katharina Markmann, Aarhus University; Niels Sandal, Aarhus University; Jens Stougaard, Aarhus University; Shusei Sato, Kazusa DNA Research Institute; Korbinian Schneeberger, Max Planck Institute for Plant Breeding Research; Stig U. Andersen, Aarhus University

Illumina Beadxpress-based SNP assays for Germplasm Diversity Studies in Chickpea and Pigeonpea
Manish Roorkiwal, ICRISAT; Shrikant Sawargaonkar, ICRISAT; Mahendar Thudi, ICRISAT; Rachit Kumar Saxena, ICRISAT; Hari Upadhyaya, ICRISAT; Rajeev Varshney, ICRISAT

Genome Wide Characterization of Resistance Genes Through Resequencing of Chickpea Genomes
Subhojit Datta, Indian Institute of Pulses Research; Jongmin Baek, University of California, Davis; Jimmy Woodward, University of California, Davis; Noelia Carrasquilla, University of California; Douglas R Cook, University of California-Davis, Davis, CA

Towards Fine Mapping of Drought Tolerance Related QTL Region in Chickpea Using Genotyping by Sequencing (GBS) Approach
Deepa Jaganathan, ICRISAT; Mahendar Thudi, ICRISAT; Sarwar Azam, ICRISAT; Pooran Gaur, ICRISAT; Henry Nguyen, University of Missouri, Columbia, MO; Tim Sutton, Australian Center for Plant Functional Genomics; Rajeev Varshney, ICRISAT

Cost-Effective KASPar Assays for SNP Genotyping and Diversity Analysis in the Reference Set of Groundnut
Pawan Khera, ICRISAT; Manda Sriswathi, ICRISAT; Manish Roorkiwal, ICRISAT; Manish Pandey, ICRISAT; Hari Upadhyaya, ICRISAT; Pasupuleti Janila, ICRISAT; Peggy Ozias-Akins, University of Georgia; Rajeev Varshney, ICRISAT

Shotgun Label Free Quantitative Proteomics of Developing Peanut (Arachis hypogaea L.) Seed
Kameswara Rao Kottapalli, Texas Tech University; Masoud Zabet-Moghaddam, Texas Tech University; Susan San Francisco, Texas Tech University; Paxton Payton, USDA-ARS

The Production and Analysis of a Synthetic Hybrid: Trifolium pallescens x Trifolium occidentale
Charlotte M Jones, IBERS, Aberystwyth University; Dr. Matthew Hegarty, IBERS, Aberystwyth University; Dr. Adriana Ravagnani, IBERS, Aberystwyth University

iPBS-Retrotransposons Based Genetic Diversity and Relationship Among Wild Annual Cicer Species
Enver Ersoy Andeden, University of Cukurova; Faheem S. Baloch, University of Cukurova; Muazzez Derya, University of Cukurova; Benjamin Kilian, IPK; Hakan Ozkan, University of Cukurova

Solgenomics.net: A Platform for Genome Assisted Breeding
Lukas Mueller, Boyce Thompson Institute for Plant Research; Naama Menda, Boyce Thompson Institute for Plant Research; Jeremy D. Edwards, Boyce Thompson Institute for Plant Research; Aureliano Bombarely Gomez, Plant Biology Department, Cornell University; Susan R. Strickler, Boyce Thompson Institute for Plant Research; Isaak Y Tecle, Boyce Thompson Institute for Plant Research

Comparative Genomics in Pasture Species – a Powerful New Approach to Assist in Methane Mitigation Strategies for Australian Livestock Industries
Parwinder Kaur, University of Western Australia; William Erskine, The University of Western Australia; Rudi Appels, Murdoch University; Zoey Durmic, The University of Western Australia; Philippe Nichols, Department of Agriculture and Food Western Australia; Sachiko Isobe, Kazusa DNA Research Institute

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